Kitap Bölümü
Abdel Moniem, H., Yusuf, M. S., & Chen, G. (2021). Ecology and population structure of some indigenous geese breeds and the impact of four GH and Pit-1 SNPs on their body weights. Environmental Science and Pollution Research, 28, 37603–37615. https://doi.org/10.1007/s11356-021-13402-x [Google Scholar] [Crossref] Akbaş, A. A., Sarı, M., Kuleaşan, Ş., & Karaşah, A. (2020). Effect of slaughter age and muscle type on selected meat quality traits and fatty acid composition of Lindovskaya geese. Journal of Animal Products, 63, 58-69. http://dx.doi.org/10.21521/mw.6429 [Google Scholar] Akın Y., Çelen M. F. (2020). Goose breeding in the Aegean Region and the importance of geese in the culinary culture of the region. Uşak University Journal of Science and Natural Sciences; 4(1): 28-39. http://dergipark.gov.tr/usufedbid [Google Scholar] Allendorf, F. W., & Luikart, G. (2007). Conservation and the genetics of populations. Blackwell Publishing. doi:10.1038/nrg2844 [Google Scholar] [Crossref] Arslan, C., & Tufan, T. (2011). Fattening performance, slaughter traits, and some blood parameters of native Turkish geese reared under semi-intensive conditions. Kafkas University Veterinary Faculty Journal, 17(3), 487–491. https://doi.org/10.9775/kvfd.2010.3366 [Google Scholar] [Crossref] Biscarini, F., Nicolazzi, E. L., Stella, A., et al. (2015). Challenges and opportunities in genetic improvement of local livestock breeds. https://doi.org/10.3389/fgene.2015.00033 [Google Scholar] [Crossref] Boz M. A., Sarıca M., Yamak U. S. (2014). Goose Breeding in Yozgat Province. Journal of Poultry Research 11 (1): 16-20, 2014 Printed ISSN:1302-3209 - Online ISSN:2147-9003. https://doi.org/10.7161/anajas.2014.29.2.147-153 [Google Scholar] [Crossref] Boz, M., A. (2015). Determination of growth, slaughter and carcass characteristics of geese obtained by natural and artificial incubation in intensive conditions. Ondokuz Mayıs University, Institute of Natural and Applied Sciences, Ph.D. Thesis, 168pp, Samsun [Google Scholar] Boz, M. A. (2019). Effect of classified rearing according to live weight on growth, carcass and some meat quality characteristics in geese. Turkish Journal of Agriculture -Food Science and Technology, 7(9), 1429-1434. https://doi.org/10.24925/turjaf.v7i9.1429-1434.2733 [Google Scholar] [Crossref] Bruford, M. W., Ginja, C., Hoffmann, I., et al. (2015). Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025. https://doi.org/10.3389/fgene.2015.00314 [Google Scholar] [Crossref] Çelik, B., & Bozkurt, Z. (2009). Slaughter and carcass characteristics in local geese of Muş region. Journal of Lalahan Animal Research Institute, 49(1), 37-46. [Google Scholar] Demiroglu, E. G., Sahin, M. & Büyük, F. (2022). Isolation and characterization of thermophilic Campylobacter species using cultural, molecular and mass spectrometry methods from geese raised in Kars region (Türkiye). Iranian Journal of Veterinary Studies, 23 (1), 24-31. doi: 10.22099/ijvr.2021.41103.5962 [Google Scholar] [Crossref] Deng, Y., Hu, S. Q., Luo, C. L., Ouyang, Q. Y., Li, L., Ma, J. M., et al. (2021). Integrative analysis of histomorphology, transcriptome, and whole genome resequencing determined that the DIO2 gene is an important gene for the protruding bump located on the forehead of geese. BMC Genomics, 22(1), 487. https://doi.org/10.1186/s12864-021-07822-9 [Google Scholar] [Crossref] Dumlu, B. (2024). Global goose meat production forecast for 2023–2027. Selcuk Journal of Agriculture and Food Sciences, 38(2), 326–341. Doi: 10.15316/SJAFS.2024.030 [Google Scholar] FAO. (2007). The state of the world's animal genetic resources for food and agriculture. Rome: Food and Agriculture Organization of the United Nations. [Google Scholar] FAO. (2013). In vivo conservation of animal genetic resources. Animal Production and Health Guidelines No. 14. Rome. ISBN 9789251077252 – 242 [Google Scholar] FAO. (2015). The second report on the state of the world’s animal genetic resources for food and agriculture. Edited by B.D. Scherf & D. Pilling. Rome. https://doi.org/10.4060/I4787E [Google Scholar] [Crossref] FAO(2025) – with major processing by Our World in Data. “Number of poultry birds – UN FAO” [dataset]. Food and Agriculture Organization of the United Nations, “Production: Crops and livestock products” [original data]. Retrieved August 15, 2025 from https://archive.ourworldindata.org/20250731-180103/grapher/poultry-livestock-count.html [Google Scholar] Fernández, J., Toro, M. Á., & Gómez-Romano, F. (2016). The use of genomic information can enhance the efficiency of conservation programs. https://doi.org/10.2527/af.2016-0009 [Google Scholar] [Crossref] Frankham, R., (1996). Relationship of genetic variation to population size in wildlife. Conserv. Biol. 10, 1500–1508. https://doi.org/10.1046/j.1523-1739.1996.10061500.x [Google Scholar] [Crossref] Frankham, R. (2005). Genetics and extinction. Biological Conservation, 126(2), 131–140. https://doi.org/10.1016/j.biocon.2005.05.002 [Google Scholar] [Crossref] Frankham, R., Ballou, J. D., & Briscoe, D. A. (2010). Introduction to conservation genetics (2nd ed.). Cambridge University Press. [Google Scholar] Gandini, G., & Villa, E. (2003). Analysis of the cultural value of local livestock breeds: A methodology. Journal of Animal Breeding and Genetics, 120, 1-11. https://doi.org/10.1046/j.1439-0388.2003.00365.x [Google Scholar] [Crossref] Gao, G., Gao, D., Zhao, X., et al.. (2021). Genome-Wide Association Study-Based Identification of SNPs and Haplotypes Associated With Goose Reproductive Performance and Egg Quality. Frontiers in Genetics, 12, Article 602583. https://doi.org/10.3389/fgene.2021.602583 [Google Scholar] [Crossref] Gao, G., Zhang, H., Ni, J., Zhao, X., Zhang, K., Wang, J., Kong, X., & Wang, Q. (2023). Insights into genetic diversity and phenotypic variations in domestic geese through comprehensive population and pan-genome analysis. Journal of Animal Science and Biotechnology, 14, Article 150. https://doi.org/10.1186/s40104-023-00944-y [Google Scholar] [Crossref] Garner, A., Rachlow, J.L., Hicks, J.F. (2005). Patterns of genetic diversity and its loss in mammalian populations. Conserv. Biol. 19, 1215–1221. https://doi.org/10.1111/j.1523-1739.2005.00105.x [Google Scholar] [Crossref] Gatew, H., & Mo, G. (2018). Next-generation sequencing platforms for latest livestock reference genome assemblies. https://doi.org/10.5897/AJB2018.16605 [Google Scholar] [Crossref] Gibson, J. P. (2009). Livestock genetic resources: Preserving genetic adaptations for future use. In J. van der Werf et al. (Eds.), Adaptation and fitness in animal populations (pp. 229–247). Springer. https://doi.org/10.1007/978-1-4020-9005-9_15 [Google Scholar] [Crossref] Gong, Y., Li, Y., Liu, X., Ma, Y., & Jiang, L. (2023). A review of the pangenome: How it affects our understanding of genomic variation, selection and breeding in domestic animals? Journal of Animal Science and Biotechnology, 14(1), 1–19. https://doi.org/10.1186/s40104-023-00860-1 [Google Scholar] [Crossref] Grzegorczyk, J., Gurgul, A., Oczkowicz, M., et al. (2021). Single nucleotide polymorphism discovery and genetic differentiation analysis of geese bred in Poland, using genotyping-by-sequencing. https://doi.org/10.3390/genes12071074 [Google Scholar] [Crossref] Heikkinen, M. E., Ruokonen, M., White, T. A., Alexander, M. M., Gündüz, İ., Dobney, K. M., et al. (2020). Long-term reciprocal gene flow in wild and domestic geese reveals complex domestication history. G3: Genes, Genomes, Genetics, 10(9), 3061–3070. https://doi.org/10.1534/g3.120.400886 [Google Scholar] [Crossref] Hiemstra, S. J., Drucker, A. G., Tvedt, M. W., Louwaars, N. P., & Oldenbroek, J. K. (2006). Options and recommendations for animal genetic resources policies. CGN Report 2006/2. Wageningen: Centre for Genetic Resources. https://doi.org/10.1016/S0921-8009(03)00089-2 [Google Scholar] [Crossref] Huang, J., Wang, C., Ouyang, J., et al. (2022). Identification of Key Candidate Genes for Beak Length Phenotype by Whole-Genome Resequencing in Geese. Front Vet Sci. 15;9:847481.doi: 10.3389/fvets.2022.847481 [Google Scholar] [Crossref] Isguzar E., Pingel H. (2003). Growth, carcass composition and content of meat of different local geese in Isparta region of Türkiye. Arch Tierz Dummerstorf; 46(1): 71-76. https://doi.org/10.5194/aab-46-71-2003 [Google Scholar] [Crossref] Jiang, Y. F., Wang, S., Wang, C. L., Xu, R. H., Wang, W. W., Jiang, Y., et al. (2023).The pangenome, obtained by long-read sequencing of 11 genomes, reveals hidden functional structural variants in pigs. iScience, 26(3), 106119. https://doi.org/10.1016/j.isci.2023.106119 [Google Scholar] [Crossref] Kasarda, R., Vostrý, L., Vostrá-Vydrová, H., et al. (2021). Food resources biodiversity: The case of local cattle in Slovakia. https://doi.org/10.3390/su13031296 [Google Scholar] [Crossref] Leroy, G., Carroll, E. L., Bruford, M. W., et al. (2017). Next-generation metrics for monitoring genetic erosion within populations of conservation concern. https://doi.org/10.1111/eva.12564 [Google Scholar] [Crossref] Liu, G., Guo, Z., Zhao, X., et al. (2023). Whole Genome Resequencing Identifies Single-Nucleotide Polymorphism Markers of Growth and Reproduction Traits in Zhedong and Zi Crossbred Geese. DOI: 10.3390/genes14020487 [Google Scholar] Lu, L., Chen, Y., Wang, Z., et al. (2015). The goose genome sequence leads to insights into the evolution of waterfowl and susceptibility to fatty liver. Genome Biology, 16, 89. https://doi.org/10.1186/s13059-015-0652-y [Google Scholar] [Crossref] Marle-Köster, E., Lashmar, S. F., Retief, A., et al. (2021). Whole-genome SNP characterisation provides insight for sustainable use of local South African livestock populations. https://doi.org/10.3389/fgene.2021.714194 [Google Scholar] [Crossref] Mercan, L. (2010). Analysis of genetic differences between domestic chicken genotypes and commercial genotypes by SSR (Simple Sequence Repeats) method (PhD thesis, Ondokuz Mayıs University, Institute of Natural and Applied Sciences, Samsun). [Google Scholar] Molotsi, A., Dube, B., & Cloete, S. W. P. (2019). The current status of indigenous ovine genetic resources in Southern Africa and future sustainable utilisation to improve livelihoods. http://dx.doi.org/10.3390/d12010014 [Google Scholar] Ouyang, J., Zheng, S., Huang, M., Tang, H., Qiu, X., Chen, S., et al. (2022). Chromosome-level genome and population genomics reveal evolutionary characteristics and conservation status of Chinese indigenous geese. Communications Biology, 5, Article 4125. https://doi.org/10.1038/s42003-022-04125-x [Google Scholar] [Crossref] Ovaska, U., Bläuer, A., Kroløkke, C., et al. (2021). The conservation of native domestic animal breeds in Nordic countries: From genetic resources to cultural heritage and good governance. https://doi.org/10.3390/ani11092730 [Google Scholar] [Crossref] Paiva, S. R., McManus, C., & Blackburn, H. D. (2016). Conservation of animal genetic resources – A new tact. https://doi.org/10.1016/j.livsci.2016.09.010 [Google Scholar] [Crossref] Palstra, F.P., Ruzzante, D.E. (2008). Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Mol. Ecol. 17, 3428–3447. https://doi.org/10.1111/j.1365-294X.2008.03842.x [Google Scholar] [Crossref] Pesmen, G., & Yonken, A. (2020). Incubatıon Propertıes of Natıve Geese ipn Türkiye. https://doi.org/10.18036/estubtdc.673383 [Google Scholar] [Crossref] Pizzi, F., Caroli, A. M., Landini, M., et al. (2013). Conservation of endangered animals: From biotechnologies to digital preservation. http://www.scirp.org/journal/PaperInformation.aspx?PaperID=35575 [Google Scholar] Saatci M. (2008). Effect of age, sex, feather colour, body measurements, and body weight on down and feather yield in native Turkish geese. Turkish Journal Veterinary Animal Science; 32(4): 293-297. [Google Scholar] Segelbacher, G., Bosse, M., Burger, P. A., et al. (2021). New developments in the field of genomic technologies and their relevance to conservation management. https://doi.org/10.1007/s10592-021-01415-5 [Google Scholar] [Crossref] Spielman, D., Brook, B.W., Frankham, R. (2004). Most species are not driven to extinction before genetic factors impact them. Proc. Natl. Acad. Sci. 101, 15261–15264. https://doi.org/10.1073/pnas.0403809101 [Google Scholar] [Crossref] Sponenberg, D. P., Martin, A. M., & Couch, C. (2019). Conservation strategies for local breed biodiversity. https://doi.org/10.3390/d11100177 [Google Scholar] [Crossref] Suminda, G. G. D., Ghosh, M., & Son, Y.O. (2022). The innovative informatics approaches of high-throughput technologies in livestock: Spearheading the sustainability and resiliency of agrigenomics research. https://doi.org/10.3390/life12111893 [Google Scholar] [Crossref] Sahin, Z., & Mercan, L. (2023). Analysis of genetic variations in Turkish domestic goose populations and Chinese × Embden crosses using microsatellite markers. Genetika, 55(2), 707–718. https://doi.org/10.2298/gensr2302707s [Google Scholar] [Crossref] Ministry of Agriculture and Forestry. (2020). Agricultural Inventory of Türkiye. Ankara: T.R. Ministry of Agriculture and Forestry Publications. [Google Scholar] Tettelin, H., Masignani, V., Cieslewicz, M. J., et al. (2005). Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome.” PNAS, 102(39), 13950–13955. https://doi.org/10.1073/pnas.0506758102 [Google Scholar] [Crossref] Thornton, P. K., van de Steeg, J., Notenbaert, A., & Herrero, M. (2009). The impacts of climate change on livestock and livestock systems in developing countries: A review of what we know and what we need to know. Agricultural Systems, 101(3), 113–127. https://doi.org/10.1016/j.agsy.2009.05.002 [Google Scholar] [Crossref] Tilki, M., Gül, B., Sarı, M., Önk, K., & Işık, S. (2011). Growth, slaughter, and carcass traits of native Turkish geese under production conditions. Atatürk University Journal of Veterinary Sciences, 6(3), 209–215. [Google Scholar] Tiwary, B. K. (2020). Evolutionary pan-genomics and applications. https://doi.org/10.1016/B978-0-12-817076-2.00003-2 [Google Scholar] [Crossref] Yakan, A., Aksu Elmalı, D., Elmalı, M., Sahin, T., Motor, S., & Can, Y. (2012). Carcass and meat quality characteristics in white and pied geese raised by the public. Journal of the Faculty of Veterinary Medicine of Kafkas University, 18(4), 663-670. DOI:10.9775/kvfd.2012.6238 [Google Scholar] Yildiz, G. (2000). Feeding geese. Feed Magazine Journal, 26, 60-62. [Google Scholar] Yilmaz, O., Cengiz, F., Ertugrul, M., et al. (2013). The domestic livestock resources of Türkiye: sheep breeds and cross-breeds and their conservation status. doi:10.1017/S2078633613000015 [Google Scholar] [Crossref] Zhang, X., et al. (2023). Genetic assessment and identification of genes related to characterization of Guangdong local goose breeds based on modern and historical genomes. Communications Biology. https://doi.org/10.1038/s42003-025-08550-6 [Google Scholar] [Crossref] Zhao, Q., Lin, Z., Chen, J., Xie, Z., Wang, J., Feng, K., Lin, W., Li, H., Hu, Z., Chen, W., Chen, F., Junaid, M., Zhang, H., Xie, Q., & Zhang, X. (2022). Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds. GigaScience, 12. https://doi.org/10.1093/gigascience/giad003 [Google Scholar] [Crossref] Zhou, Y., Lv, Y., Han, X., et al. (2022). Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history. ISSN 1088-9051/22. doi: 10.1101/gr.276550.122 [Google Scholar] [Crossref] Zheng, S., Ouyang, J., Liu, S., Tang, H., Xiong, Y., Yan, X., & Chen, H. (2023). Genomic signatures reveal selection in Lingxian white goose. Poultry Science, 102, 102269. https://doi.org/10.1016/j.psj.2022.102269 [Google Scholar] [Crossref]
Pan-Genome Approach for Assessing Genetic Diversity: A Review of Native Turkish Geese
Fatma Nur Kırat
Ar. Gör., Ankara Üniversitesi
Erişim Durumu
Özel Erişim
Yayınlanma Tarihi
23 July 2026
Sayfa Sayısı
47-62
Özet
Türkiye has an important position in the world with its biological diversity and native animal breeds. Among the domestic animal breeds, domestic goose breeds come to the fore. Domestic Turkish geese have been bred for years, especially in Nature Anatolia, Central Anatolia and Black Sea regions, thanks to their economic contributions. In contrast, increases in industrial production have revealed significant threats such as habitat destruction and loss of genetic diversity. This affects both biodiversity and sustainable animal production systems. In this context, it is important to protect domestic genetic resources and to conduct comprehensive genetic analyses.
In this context, when the relevant literature was examined, it was seen that the traditional methods used (mtDNA and microsatellites) were limited in performing in-depth analysis. However, large-scale analyses such as the pan-genome allow for a better understanding of evolutionary processes and genetic diversity. In this study, the importance of the pan-genome approach in better understanding the genetic structure of Turkish native geese and protecting the genetic heritage was evaluated. In this context, the differences of Pan-Genome analysis from other methods, its importance for Türkiye and its applicability in geese were mentioned. In conclusion, the molecular basis of the genetic diversity, adaptation potential and phenotypic variation of Turkish native geese was emphasized with the Pan-Genome approach, and a scientific infrastructure and roadmap for future genomic studies and breeding programs were presented.
Anahtar Kelimeler: Pan-genome, Goose, Genetic diversity, Native Turkish geese, Genomic resources
Konu Alanı: Tarım Bilimleri -> Tarım (diğer) -> Ziraat, Orman ve Su Ürünleri
Bu Bölüme Atıf Yap
Kitap Bölümü (PDF)
Pan-Genome Approach for Assessing Genetic Diversity: A Review of Native Turkish Geese
Bu Bölüme Atıf Yap:
Kırat, F. N. (2026). Pan-Genome Approach for Assessing Genetic Diversity: A Review of Native Turkish Geese . In ÇİLEK, S. (Ed.), Hayvan Yetiştiriciliği ve Güncel yaklaşımlar | Zootekni, Genetik, Refah ve Biyoistatistik (pp. 47-62). Vizetek Yayıncılık. https://doi.org/10.54637/vizetek.9786253823498
Kırat, F. N. (2026). Pan-Genome Approach for Assessing Genetic Diversity: A Review of Native Turkish Geese . In ÇİLEK, S. (Ed.), Hayvan Yetiştiriciliği ve Güncel yaklaşımlar | Zootekni, Genetik, Refah ve Biyoistatistik (pp. 47-62). Vizetek Yayıncılık. https://doi.org/10.54637/vizetek.9786253823498
| Kitap: |
| DOI: |
| Yayınevi:
Vizetek Yayıncılık |